SNP Profiles of GU 221 /C   View Data

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 Key

 1234567891011121314
_Input profile
TTACTTCCGGTTAAAACCGGGGGGCCAA
1._RUQ_200
_______AA___GG__
2._RUQ_200
_______AA___GG__
3._GU_221_/C
_______AA___GG__
4._GU_221_/C
_______AA___GG__
5._GU_221_/C
_______AA___GG__
6._GU_221_/C
_______AA___GG__
7._GU_221_/C
_______AA___GG__
8._GU_221_/C
_______AA___GG__
9._GU_221_/C
_______AA___GG__
10._GU_221_/C
_______AA___GG__
11._GU_221_/C
_______AA___GG__
12._GU_221_/C
_______AA___GG__
13._GU_221_/C
_______AA___GG__
14._GU_221_/C
_______AA___GG__
15._GC-01-075-4-11
_______AA___GG__
16._GC-01-075-4-11
_______AA___GG__
17._GC-01-075-4-11
_______AA___GG__
18._GC-01-075-4-11
_______AA___GG__
19._GC-01-075-4-11
_______AA___GG__
20._GC-01-075-4-11
_______AA___GG__
21._GC-01-075-4-11
_______AA___GG__
22._GC-01-075-4-11
_______AA___GG__
23._GC-01-075-4-11
_______AA___GG__
24._GC-01-075-4-11
_______AA___GG__
25._GC-01-075-4-11
_______AA___GG__
26._GC-01-075-4-11
_______AA___GG__
27._GC-01-075-4-11
_______AA___GG__
28._GC-01-075-4-11
_______AA___GG__
29._GU_221_/C
_______AA___GG__
30._GU_221_/C
_______AA___GG__
31._GC-01-75-4-11
_______AA___GG__
32._RUQ_200
_______AA___GG__
 1516171819202122232425262728
_Input profile
GGAACTACCTAAAGCCATACCCCTAGCC
1._RUQ_200
GG____AA_CC_ACCC___
2._RUQ_200
_____AA_CC_AC____
3._GU_221_/C
_____AA_CC_AC____
4._GU_221_/C
_____AA_CC_AC____
5._GU_221_/C
_____AA_CC_AC____
6._GU_221_/C
_____AA_CC_AC____
7._GU_221_/C
_____AA_CC_AC____
8._GU_221_/C
_____AA_CC_AC____
9._GU_221_/C
_____AA_CC_AC____
10._GU_221_/C
_____AA_CC_AC____
11._GU_221_/C
_____AA_CC_AC____
12._GU_221_/C
_____AA_CC_AC____
13._GU_221_/C
_____AA_CC_AC____
14._GU_221_/C
_____AA_CC_AC____
15._GC-01-075-4-11
GG____AA_CC_ACCC___
16._GC-01-075-4-11
GG____AA_CC_ACCC___
17._GC-01-075-4-11
GG____AA_CC_ACCC___
18._GC-01-075-4-11
GG____AA_CC_ACCC___
19._GC-01-075-4-11
GG____AA_CC_ACCC___
20._GC-01-075-4-11
GG____AA_CC_ACCC___
21._GC-01-075-4-11
GG____AA_CC_ACCC___
22._GC-01-075-4-11
GG____AA_CC_ACCC___
23._GC-01-075-4-11
GG____AA_CC_ACCC___
24._GC-01-075-4-11
GG____AA_CC_ACCC___
25._GC-01-075-4-11
GG____AA_CC_ACCC___
26._GC-01-075-4-11
GG____AA_CC_ACCC___
27._GC-01-075-4-11
GG____AA_CC_CCCC___
28._GC-01-075-4-11
GG____AA_CC_CCCC___
29._GU_221_/C
_____AA_CC_CC____
30._GU_221_/C
_____AA_CC_CC____
31._GC-01-75-4-11
GG____AA_CC_ACGG___
32._RUQ_200
GG____AA_CC_ACGG___
 2930313233343536373839404142
_Input profile
AACCCCGGAATTTTAAAACCGGGGCCAA
1._RUQ_200
__CCGGAA__AA__GG-_AA
2._RUQ_200
AA__GG______GG__AA
3._GU_221_/C
AG__GG______GG__AA
4._GU_221_/C
AG__GG______GG__AA
5._GU_221_/C
AG__GG______GG__AA
6._GU_221_/C
AG__GG______GG__AA
7._GU_221_/C
AG__GG______GG__AA
8._GU_221_/C
AG__GG______GG__AA
9._GU_221_/C
AG__GG______GG__AA
10._GU_221_/C
AG__GG______GG__AA
11._GU_221_/C
AG__GG______GG__AA
12._GU_221_/C
AG__GG______GG__AA
13._GU_221_/C
AG__GG______GG__AA
14._GU_221_/C
AG__GG______GG__AA
15._GC-01-075-4-11
AG_CTGGAA__AA_GGGGGG_AA
16._GC-01-075-4-11
AG_CTGGAA__AA_GGGGGG_AA
17._GC-01-075-4-11
AG_CTGGAA__AA_GGGGGG_AA
18._GC-01-075-4-11
AG_CTGGAA__AA_GGGGGG_AA
19._GC-01-075-4-11
AG_CTGGAA__AA_GGGGGG_AA
20._GC-01-075-4-11
AG_CTGGAA__AA_GGGGGG_AA
21._GC-01-075-4-11
AG_CTGGAA__AA_GGGGGG_AA
22._GC-01-075-4-11
AG_CTGGAA__AA_GGGGGG_AA
23._GC-01-075-4-11
AG_CTGGAA__AA_GGGGGG_AA
24._GC-01-075-4-11
AG_CTGGAA__AA_GGGGGG_AA
25._GC-01-075-4-11
AG_CTGGAA__AA_GGGGGG_AA
26._GC-01-075-4-11
AG_CTGG___AA_GGGGGG_AA
27._GC-01-075-4-11
AA_CCGGAA__AA_GGGGGG_GG
28._GC-01-075-4-11
AA_CCGGAA__AA_GGGGGG_GG
29._GU_221_/C
AA__GG______GG__GG
30._GU_221_/C
AA__GG______GG__GG
31._GC-01-75-4-11
___CCAA__AA_CCCCGG_AA
32._RUQ_200
___CCAA__AA_CCCCGG_AA
 4344454647484950515253545556
_Input profile
CCCCAACTGGTTCCGTAATTTTGGTTAA
1._RUQ_200
CC_________TT___
2._RUQ_200
____GG_CC___TT___
3._GU_221_/C
____GG_CC___TT___
4._GU_221_/C
____GG_CC___TT___
5._GU_221_/C
____GG_CC___TT___
6._GU_221_/C
____GG_CC___TT___
7._GU_221_/C
____GG_CC___TT___
8._GU_221_/C
____GG_CC___TT___
9._GU_221_/C
____GG_CC___TT___
10._GU_221_/C
____GG_CC___TT___
11._GU_221_/C
____GG_CC___TT___
12._GU_221_/C
____GG_CC___TT___
13._GU_221_/C
____GG_CC___TT___
14._GU_221_/C
____GG_CC___TT___
15._GC-01-075-4-11
CC___GG_CC___TT___
16._GC-01-075-4-11
CC___GG_CC___TT___
17._GC-01-075-4-11
CC___GG_CC___TT___
18._GC-01-075-4-11
CC___GG_CC___TT___
19._GC-01-075-4-11
CC___GG_CC___TT___
20._GC-01-075-4-11
CC___GG_CC___TT___
21._GC-01-075-4-11
CC___GG_CC___TT___
22._GC-01-075-4-11
CC___GG_CC___TT___
23._GC-01-075-4-11
CC___GG_CC___TT___
24._GC-01-075-4-11
CC___GG_CC___TT___
25._GC-01-075-4-11
CC___GG_CC___TT___
26._GC-01-075-4-11
CC___GG_CC___TT___
27._GC-01-075-4-11
CC___GG_CC___TT___
28._GC-01-075-4-11
CC___GG_CC___TT___
29._GU_221_/C
____GG_CC___TT___
30._GU_221_/C
____GG_CC___TT___
31._GC-01-75-4-11
____GG_____AA___
32._RUQ_200
____GG_____AA___
 57585960          
_Input profile
GGGGTTAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._RUQ_200
_GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._RUQ_200
_GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._GU_221_/C
_GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._GU_221_/C
_GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._GU_221_/C
_GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._GU_221_/C
_GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._GU_221_/C
_GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._GU_221_/C
_GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._GU_221_/C
_GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._GU_221_/C
_GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._GU_221_/C
_GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._GU_221_/C
_GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._GU_221_/C
_GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._GU_221_/C
_GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._GC-01-075-4-11
_GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._GC-01-075-4-11
_GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._GC-01-075-4-11
_GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._GC-01-075-4-11
_GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._GC-01-075-4-11
_GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._GC-01-075-4-11
_GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._GC-01-075-4-11
_GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._GC-01-075-4-11
_GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._GC-01-075-4-11
_GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._GC-01-075-4-11
_GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
25._GC-01-075-4-11
_GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
26._GC-01-075-4-11
_GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
27._GC-01-075-4-11
_CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
28._GC-01-075-4-11
_CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
29._GU_221_/C
_CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
30._GU_221_/C
_CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
31._GC-01-75-4-11
_CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
32._RUQ_200
_CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: GU_221_/C RUQ_200

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

1._GU_221_/C RUQ_200

identical
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._GU_221_/C RUQ_200

identical
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

3._GU_221_/C

96.2 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1411 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

4._GU_221_/C

96.2 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1411 6
 Dapeng Zhang, 2016

5._GU_221_/C

96.2 %
13 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1411 8
 Dapeng Zhang, 2016

6._GU_221_/C

96.2 %
13 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1411 9
 Dapeng Zhang, 2016

7._GU_221_/C

96.2 %
13 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1411 10
 Dapeng Zhang, 2016

8._GU_221_/C

96.2 %
13 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1411 12
 Dapeng Zhang, 2016

9._GU_221_/C

96.2 %
13 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1411 14
 Dapeng Zhang, 2016

10._GU_221_/C

96.2 %
13 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1411 16
 Dapeng Zhang, 2016

11._GU_221_/C

96.2 %
13 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1411 13 > F
 Dapeng Zhang, 2016

12._GU_221_/C

96.2 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1411 15 > F
 Dapeng Zhang, 2016

13._GU_221_/C

96.2 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1411 15 > F
 Dapeng Zhang, 2016

14._GU_221_/C

96.2 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1411 4 > FP
 Dapeng Zhang, 2016

15._GU_221_/C GC-01-075-4-11

90.5 %
21 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

16._GU_221_/C GC-01-075-4-11

90.5 %
21 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

17._GU_221_/C GC-01-075-4-11

90.5 %
21 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

18._GU_221_/C GC-01-075-4-11

90.5 %
21 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

19._GU_221_/C GC-01-075-4-11

90.5 %
21 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP3
 Mars, 2018

20._GU_221_/C GC-01-075-4-11

90.5 %
21 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

21._GU_221_/C GC-01-075-4-11

90.5 %
21 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

22._GU_221_/C GC-01-075-4-11

90.5 %
21 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

23._GU_221_/C GC-01-075-4-11

90.5 %
21 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

24._GU_221_/C GC-01-075-4-11

90.5 %
21 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

25._GU_221_/C GC-01-075-4-11

90.5 %
21 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

26._GU_221_/C GC-01-075-4-11

90 %
20 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

27._GU_221_/C GC-01-075-4-11

83.3 %
21 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

28._GU_221_/C GC-01-075-4-11

83.3 %
21 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

29._GU_221_/C

80.8 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1411 11
 Dapeng Zhang, 2016

30._GU_221_/C

80.8 %
13 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1411 1 > FP
 Dapeng Zhang, 2016

31._GU_221_/C GC-01-75-4-11

70.6 %
17 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 11, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

32._GU_221_/C RUQ_200

70.6 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP13 2TcSNP19 3TcSNP33 4TcSNP49 5TcSNP52
6TcSNP131 7TcSNP143 8TcSNP144 9TcSNP176 10TcSNP189
11TcSNP194 12TcSNP230 13TcSNP290 14TcSNP305 15TcSNP329
16TcSNP363 17TcSNP421 18TcSNP519 19TcSNP522 20TcSNP529
21TcSNP546 22TcSNP577 23TcSNP589 24TcSNP591 25TcSNP602
26TcSNP640 27TcSNP642 28TcSNP644 29TcSNP645 30TcSNP660
31TcSNP702 32TcSNP723 33TcSNP731 34TcSNP739 35TcSNP800
36TcSNP823 37TcSNP835 38TcSNP836 39TcSNP872 40TcSNP899
41TcSNP945 42TcSNP998 43TcSNP999 44TcSNP1010 45TcSNP1019
46TcSNP1053 47TcSNP1062 48TcSNP1112 49TcSNP1144 50TcSNP1205
51TcSNP1230 52TcSNP1237 53TcSNP1253 54TcSNP1275 55TcSNP1293
56TcSNP1401 57TcSNP1404 58TcSNP1458 59TcSNP1524 60TcSNP1527